Pratiques de protection des cultures en agroécosystèmes tropicaux et risques de maladies humaines et animales d’origine bactérienne

Open Access

Review

Numéro		Cah. Agric. Volume 30, 2021


Numéro d'article		42
Nombre de pages		9
DOI		https://doi.org/10.1051/cagri/2021028
Publié en ligne		29 octobre 2021

Andru J, Cosson JF, Caliman JP, Benoit E. 2013. Coumatetralyl resistance of Rattus tanezumi infesting oil palm plantations in Indonesia. Ecotoxicology 22: 377–396. https://doi.org/10.1007/s10646-012-1032-y. [CrossRef] [PubMed] [Google Scholar]
Bessou C, Verwilghen A, Beaudoin-Ollivier L, Marichal R, Ollivier J, Baron V, et al. 2017. Agroecological practices in oil palm plantations: Examples from the field. OCL 24: D305. https://doi.org/10.1051/ocl/2017024. [CrossRef] [EDP Sciences] [Google Scholar]
Bicudo JR, Goyal SM. 2003. Pathogens and manure management systems: A review. Environmental Technology 24: 115–130. https://doi.org/10.1080/09593330309385542. [CrossRef] [PubMed] [Google Scholar]
Bodey GP, Bolivar R, Fainstein V, Jadeja L. 1983. Infections caused by Pseudomonas aeruginosa. Reviews of Infectious Diseases 5: 279–313. https://doi.org/10.1093/clinids/5.2.279. [CrossRef] [Google Scholar]
Callahan MT, Micallef SA. 2019. Waxing and cultivar affect Salmonella enterica persistence on cucumber (Cucumis sativus L.) fruit. International Journal of Food Microbiology 310: 108359. https://doi.org/10.1016/j.ijfoodmicro.2019.108359. [CrossRef] [PubMed] [Google Scholar]
Chanvatik S, Donnua S, Lekagul A, Kaewkhankhaeng W, Vongmongkol V, Athipunyakom P, et al. 2019. Antibiotic use in mandarin production (Citrus reticulata Blanco) in major mandarin-producing areas in Thailand: A survey assessment. PLoS ONE 14: e0225172. https://doi.org/10.1371/journal.pone.0225172. [PubMed] [Google Scholar]
Couillerot O, Prigent-Combaret C, Caballero-Mellado J, Moënne-Loccoz Y. 2009. Pseudomonas fluorescens and closely-related fluorescent pseudomonads as biocontrol agents of soil-borne phytopathogens. Letters in Applied Microbiology 48: 505–512. https://doi.org/10.1111/j.1472-765X.2009.02566.x. [CrossRef] [PubMed] [Google Scholar]
Damasceno CL, Duarte EAA, dos Santos LBPR, de Oliveira TAS, de Jesus FN, de Oliveira LM, et al. 2019. Postharvest biocontrol of anthracnose in bananas by endophytic and soil rhizosphere bacteria associated with sisal (Agave sisalana) in Brazil. Biological Control 137: 104016. https://doi.org/10.1016/j.biocontrol.2019.104016. [CrossRef] [Google Scholar]
Deguine JP, Gloanec C, Laurent P, Ratnadass A, Aubertot JN. 2016. Protection agroécologique des cultures. Versailles (France) : Ed. Quae, 288 p. [Google Scholar]
Derne BT, Fearnley EJ, Lau CL, Paynter S, Weinstein P. 2011. Biodiversity and leptospirosis risk: a case of pathogen regulation? Medical Hypotheses 77: 339–344. https://doi.org/10.1016/j.mehy.2011.05.009. [CrossRef] [PubMed] [Google Scholar]
Diaz-Sanchez S, D’Souza D, Biswas D, Hanning I. 2015. Botanical alternatives to antibiotics for use in organic poultry production. Poultry Science 94: 1419–1430. https://doi.org/10.3382/ps/pev014. [CrossRef] [PubMed] [Google Scholar]
Eberl L, Vandamme P. 2016. Members of the genus Burkholderia: Good and bad guys. F1000 Research 2016 5: 1007. https://doi.org/10.12688/f1000research.8221.1. [Google Scholar]
Fernández M, Porcel M, de laTorre J, Molina-Henares MA, Daddaoua A, Llamas MA, et al. 2015. Analysis of the pathogenic potential of nosocomial Pseudomonas putida strains. Frontiers in Microbiology 6: 871. https://doi.org/10.3389/fmicb.2015.00871. [CrossRef] [Google Scholar]
Gondard M, Cabezas-Cruz A, Charles RA, Vayssier-Taussat M, Albina E, Moutailler S. 2017. Ticks and tick-borne pathogens of the Caribbean: Current understanding and future directions for more comprehensive surveillance. Frontiers in Cellular and Infection Microbiology 7: 490. https://doi.org/10.3389/fcimb.2017.00490. [CrossRef] [PubMed] [Google Scholar]
Grimshaw RG, Faiz A. 1995. Vetiver grass: Application for stabilization of structures. In: Proceedings of the Sixth International Conference on Low-Volume Roads, June 25–29, 1995, Minneapolis, MN, pp. 74–81. [Google Scholar]
Gu YH, Mazzola M. 2003. Modification of fluorescent pseudomonad community and control of apple replant disease induced in a wheat cultivar-specific manner. Applied Soil Ecology 24: 57–72. https://doi.org/10.1016/S0929-1393(03)00066-0. [CrossRef] [Google Scholar]
Henriquez T, Lenzi A, Baldi A, Marvasi M. 2020. Frontiers in plant breeding: Perspectives for the selection of vegetables less susceptible to enteric pathogens. Frontiers in Microbiology 11: 1087. https://doi.org/10.3389/fmicb.2020.01087. [PubMed] [Google Scholar]
Herth A. 2011. Le biocontrôle pour la protection des cultures. 15 recommandations pour soutenir les technologies vertes. Rapport au Premier Ministre François Fillon. https://agriculture.gouv.fr/sites/minagri/files/documents/pdf/le_biocontrole_Rapport_Herth_web_mail.pdf. [Google Scholar]
Hill SB, MacRae RJ. 1996. Conceptual framework for the transition from conventional to sustainable agriculture. Journal of Sustainable Agriculture 7: 81–87. https://doi.org/10.1300/J064v07n01_07. [CrossRef] [Google Scholar]
Howell PE, Delgado ML, Scribner KT. 2017. Landscape genetic analysis of co-distributed white-footed mice (Peromyscus leucopus) and prairie deer mice (Peromyscus maniculatus bairdii) in an agroecosystem. Journal of Mammalogy 98: 793–803. https://doi.org/10.1093/jmammal/gyx042. [CrossRef] [Google Scholar]
Htwe NM, Singleton GR, Johnson DE. 2019. Interaction between rodents and weeds in a lowland rice agro-ecosystem in Myanmar: The need for an integrated approach to management. Integrative Zoology 14: 396–409. https://doi.org/10.1111/1749-4877.12395. [CrossRef] [PubMed] [Google Scholar]
Jechalke S, Heuer H, Siemens J, Amelung W, Smalla K. 2014. Fate and effects of veterinary antibiotics in soil. Trends in Microbiology 22: 536–545. https://doi.org/10.1016/j.tim.2014.05.005. [CrossRef] [PubMed] [Google Scholar]
Khan ZR, Midega CAO, Pittchar J, Pickett JA, Bruce T. 2011 Push-pull technology: A conservation agriculture approach for integrated management of insect pests, weeds and soil health in Africa. International Journal of Agricultural Sustainability 9: 162–170. https://doi.org/10.3763/ijas.2010.0558. [CrossRef] [Google Scholar]
Kumar R, Klafke GM, Miller RJ. 2020. Voltage-gated sodium channel gene mutations and pyrethroid resistance in Rhipicephalus microplus. Ticks and Tick-borne Diseases 11: 101404. https://doi.org/10.1016/j.ttbdis.2020.101404. [CrossRef] [PubMed] [Google Scholar]
Leggett MA. 2012. Managing populations of the Australasian harrier (Circus approximans) to reduce passerine bird damage in vineyards. Unpublished MSc Thesis, Lincoln University, New Zealand, 121 p. [Google Scholar]
Lenzi A, Marvasi M., Baldi A. 2021. Agronomic practices to limit pre-and post-harvest contamination and proliferation of human pathogenic Enterobacteriaceae in vegetable produce. Food Control 119: 107486. https://doi.org/10.1016/j.foodcont.2020.107486. [CrossRef] [Google Scholar]
Litterick AM, Harrier L, Wallace P, Watson CA, Wood M. 2004. The role of uncomposted materials, composts, manures, and compost extracts in reducing pest and disease incidence and severity in sustainable temperate agricultural and horticultural crop production – A review. Critical Reviews in Plant Sciences 23: 453–479. https://doi.org/10.1080/07352680490886815. [CrossRef] [Google Scholar]
LoGiudice K, Ostfeld RS, Schmidt KA, Keesing F. 2003. The ecology of infectious disease: Effects of host diversity and community composition on Lyme disease risk. PNAS 100: 567–571. https://doi.org/10.1073/pnas.0233733100. [CrossRef] [PubMed] [Google Scholar]
Mansuy A, Fontaine R. 2014. Fiche phytosanitaire canne à sucre – Rats. Ecophytopic. http://www.bsv-reunion.fr/wp-content/uploads/2015/02/Fiche-phyto-rats.pdf. [Google Scholar]
Marquez A, Khalil RA, Fourel I, Ovarbury T, Pinot A, Rosine A, et al. 2019. Resistance to anticoagulant rodenticides in Martinique could lead to inefficient rodent control in a context of endemic leptospirosis. Scientific Reports 9: 13491. https://doi.org/10.1038/s41598-019-49661-5. [CrossRef] [PubMed] [Google Scholar]
Massawe AW, Rwamugira W, Leirs H, Makundi RH, Mulungu LS. 2005. Influence of land preparation methods and vegetation cover on population abundance of Mastomys natalensis in Morogoro, Tanzania. Belgian Journal of Zoology 135(Suppl): 187–190. [Google Scholar]
McCauley DJ, Salkeld DJ, Young HS, Makundi R, Dirzo R, Eckerlin RP, et al. 2015. Effects of land use on plague (Yersinia pestis) activity in rodents in Tanzania. American Journal of Tropical Medicine and Hygiene 92: 776–783. https://doi.org/10.4269/ajtmh.14-0504. [CrossRef] [PubMed] [Google Scholar]
McKenna M. 2019. Antibiotics set to flood Florida’s troubled orange orchards. Nature 567: 302–303. https://doi.org/10.1038/d41586-019-00878-4. [CrossRef] [PubMed] [Google Scholar]
McManus PS. 2014. Does a drop in the bucket make a splash? Assessing the impact of antibiotic use on plants. Current Opinion in Microbiology 19: 76–82. https://doi.org/10.1016/j.mib.2014.05.013. [CrossRef] [PubMed] [Google Scholar]
McManus PS, Stockwell VO, Sundin GW, Jones AL. 2002. Antibiotic use in plant agriculture. Annual Review of Phytopathology 40: 443–465. https://doi.org/10.1146/annurev.phyto.40.120301.093927. [CrossRef] [PubMed] [Google Scholar]
Meerburg BG, Singleton GR, Kijlstra A. 2009. Rodent-borne diseases and their risks for public health. Critical Reviews in Microbiology 35: 221–270. https://doi.org/10.1080/10408410902989837. [CrossRef] [PubMed] [Google Scholar]
Mendes R, Garbeva P, Raaijmakers JM. 2013. The rhizosphere microbiome: Significance of plant beneficial plant pathogenic and human pathogenic microorganisms. FEMS Microbiology Reviews 37: 634–663. https://doi.org/10.1111/1574-6976.12028. [CrossRef] [PubMed] [Google Scholar]
Miarinjara A, Rahelinirina S, Razafimahatratra NL, Girod R, Rajerison M, Boyer S. 2019. Field assessment of insecticide dusting and bait station treatment impact against rodent flea and house flea species in the Madagascar plague context. PLoS Neglected Tropical Diseases 13: e0007604. https://doi.org/10.1371/journal.pntd.0007604. [CrossRef] [PubMed] [Google Scholar]
Nibouche S, Tibère R. 2010. Mechanism of resistance to the spotted stalk borer, Chilo sacchariphagus, in the sugar cane cultivar R 570. Entomologia Experimentalis et Applicata 135: 308–314. https://doi.org/10.1111/j.1570-7458.2010.00996.x. [CrossRef] [Google Scholar]
Ottesen AR, Gorham S, Pettengill JB, Rideout S, Evans P, Brown E. 2015. The impact of systemic and copper pesticide applications on the phyllosphere microflora of tomatoes. Journal of the Science of Food and Agriculture 95: 1116–1125. https://doi.org/10.1002/jsfa.7010. [CrossRef] [PubMed] [Google Scholar]
Pires AFA, Patterson L, Kukielka EA, Aminabadi P, Navarro-Gonzalez N, Jay-Russell MT. 2019. Prevalence and risk factors associated with Campylobacter spp. and Salmonella enterica in livestock raised on diversified small-scale farms in California. Epidemiology and Infection 147: e321. https://doi.org/10.1017/S095026881900205X. [PubMed] [Google Scholar]
Polack B, Boulouis HJ, Guillot J, Chermette R. 2015. Les zoonoses (tableaux synthétiques : animaux réservoirs de pathogènes et modes de transmission). Revue Francophone des Laboratoires 477: 67–79. https://doi.org/10.1016/S1773-035X(15)30318-X. [CrossRef] [PubMed] [Google Scholar]
Quénéhervé P, Dao JC, Ducelier D, Langlais C, Lassoudière A, Lhoste P, et al. 2005. Faisabilité technique de l’agriculture biologique en Martinique : productions. In : François M, Moreau R, Sylvander B, eds. Agriculture biologique en Martinique. Montpellier (France) : IRD Éditions, pp. 149–233. https://doi.org/10.4000/books.irdeditions.2814. [Google Scholar]
Rahelinirina S, Duplantier JM. 1997. Suivi mensuel de la dynamique des populations de rats noirs (Rattus rattus) dans les foyers de peste de la région de Mandoto. In : Direction de la protection des végétaux (DPV), Rongeurs et lutte antimurine à Madagascar, recueil des exposés lors du symposium tenu à Antananarivo du 1^er au 5 décembre, tome ii, pp. 91–107. [Google Scholar]
Rahelinirina S, Duplantier JM., Ratovonjato J, Ramilijaona O, Ratsimba M, Rahalison L. 2010. Study on the movement of Rattus rattus and evaluation of the plague dispersion in Madagascar. Vector-Borne and Zoonotic Diseases 10: 77–84. https://doi.org/10.1089/vbz.2009.0019. [CrossRef] [PubMed] [Google Scholar]
Rahelinirina S, Scobie K, Ramasindrazana B, Andrianaivoarimanana V, Rasoamalala F, Randriantseheno LN, et al. 2021. Rodent control to fight plague: Field assessment of methods based on rat density reduction. Integrative Zoology 0: 1–18. https://doi.org/10.1111/1749-4877.12529. [Google Scholar]
Rakotonanahary RJL, Harrison A, Maina AN, Jiang J, Richards AL, Rajerison M, et al. 2017. Molecular and serological evidence of flea-associated typhus group and spotted fever group rickettsial infections in Madagascar. Parasites & Vectors 10: 125. https://doi.org/10.1186/s13071-017-2061-4. [CrossRef] [Google Scholar]
Rasamiravaka T, Raveloson PA, Rajaonarivelo PJ, Rabemanantsoa C, Andrianarisoa B, Duez P, et al. 2018. Malagasy traditional treatments of infectious plant diseases exert anti-virulence activities against Pseudomonas aeruginosa and Ralstonia solanacearum. Journal of Microbiology, Biotechnology and Food Sciences 7: 377–382. https://doi.org/10.15414/jmbfs.2018.7.4.377-382. [CrossRef] [Google Scholar]
Ratnadass A, Deguine JP. 2021. Crop protection practices and viral zoonotic risks within a One Health framework. Science of the Total Environment 774: 145172. https://doi.org/10.1016/j.scitotenv.2021.145172. [CrossRef] [Google Scholar]
Rodríguez-Pastor R, Escudero R, Vidal D, Mougeot F, Arroyo B, Lambin X, et al. 2017. Density-dependent prevalence of Francisella tularensis in fluctuating vole populations, Northwestern Spain. Emerging Infectious Diseases 23(8): 1377–1379. https://doi.org/10.3201/eid2308.161194. [CrossRef] [PubMed] [Google Scholar]
Rugalema G, Mnyone L. 2020. Indiscriminate use of agro-veterinary pesticides in plague endemic foci in Tanzania: Potential risk for development of insecticide resistance in flea vectors. Research Square. https://doi.org/10.21203/rs.3.rs-36506/v1. [Google Scholar]
Sellers LA, Long RF, Jay-Russell MT, Li X, Atwill ER, Engeman RM, et al. 2018. Impact of field-edge habitat on mammalian wildlife abundance, distribution, and vectored foodborne pathogens in adjacent crops. Crop Protection 108: 1–11. https://doi.org/10.1016/j.cropro.2018.02.005. [CrossRef] [Google Scholar]
Stockwell VO, Duffy B. 2012. Use of antibiotics in plant agriculture. Revue scientifique et technique – Office international des epizooties 31(1): 199–210. https://doi.org/10.20506/rst.31.1.2104. [Google Scholar]
Sundin GW, Castiblanco LF, Yuan X, Zeng Q, Yang CH. 2016. Bacterial disease management: Challenges, experience, innovation, and future prospects. Molecular Plant Pathology 17: 1506–1518. https://doi.org/10.1111/mpp.12436. [CrossRef] [PubMed] [Google Scholar]
Tangkanakul W, Smits HL, Jatanasen S, Ashford DA. 2005. Leptospirosis: An emerging health problem in Thailand. Southeast Asian Journal of Tropical Medicine and Public Health 36: 281–288. [Google Scholar]
Theofel CG, Williams TR, Gutierrez E, Davidson GR, Jay-Russell M, Harris LJ. 2020. Microorganisms move a short distance into an almond orchard from an adjacent upwind poultry operation. Applied and Environmental Microbiology 86: e00573-20. https://doi.org/10.1128/AEM.00573-20. [Google Scholar]
Tobin ME. 1994. Polynesian rats. The Handbook: Prevention and Control of Wildlife Damage. 7. https://digitalcommons.unl.edu/icwdmhandbook/7. [Google Scholar]
van den Berg J. 2006. Vetiver grass (Vetiveria zizanioides (L.) Nash) as trap plant for Chilo partellus (Swinhoe) (Lepidoptera: Pyralidae) and Busseola fusca (Fuller) (Lepidoptera: Noctuidae). Annales de la Société Entomologique de France 42: 449–454. https://doi.org/10.1080/00379271.2006.10697478. [CrossRef] [Google Scholar]
Wu S, Nishihara M, Kawasaki Y, Yokoyama A, Matsuura K, Koga T, et al. 2009. Inactivation of Escherichia coli in soil by solarization. Soil Science & Plant Nutrition 55: 258–263. https://doi.org/10.1111/j.1747-0765.2009.00362.x. [CrossRef] [Google Scholar]
Xie WY, Shen QR, Zhao FJ. 2018. Antibiotics and antibiotic-resistance from animal manures to soil: A review. European Journal of Soil Science 69: 181–195. https://doi.org/10.1111/ejss.12494. [CrossRef] [Google Scholar]
Xu A, Buchanan RL, Micallef SA. 2016. Impact of mulches and growing season on indicator bacteria survival during lettuce cultivation. International Journal of Food Microbiology 224: 28–39. https://doi.org/10.1016/j.ijfoodmicro.2016.02.013. [CrossRef] [PubMed] [Google Scholar]
Yoshizawa N, Usui M, Fukuda A, Asai T, Higuchi H, Okamoto E, et al. 2020. Manure compost is a potential source of tetracycline-resistant Escherichia coli and tetracycline resistance genes in Japanese farms. Antibiotics 9: 76. https://doi.org/10.3390/antibiotics9020076. [CrossRef] [Google Scholar]

Les statistiques affichées correspondent au cumul d'une part des vues des résumés de l'article et d'autre part des vues et téléchargements de l'article plein-texte (PDF, Full-HTML, ePub... selon les formats disponibles) sur la platefome Vision4Press.

Les statistiques sont disponibles avec un délai de 48 à 96 heures et sont mises à jour quotidiennement en semaine.

Le chargement des statistiques peut être long.